The D. gigantea gene models had ∼87% complete single copy BUSCO genes (supplementary fig.
Bioinformatics 31 (19):3210–3212. We compared the quality of the D. gigantea gene models with six published cnidarians (Aiptasia pallida, Acropora digitifera, Hydra magnipapillata, Nematostella vectensis, Orbicella faveolata, and Stylophora pistillata). Keywords: RNA-seq, Disease, Cnidaria, Coral, Innate immunity Development of an integrated genomic map for a threatened Caribbean coral (Orbicella faveolata). Orbicella faveolata coral, one of three surviving members of genus Orbicella. Montastraea faveolata (Ellis and Solander, 1786) taxonomy/phylogenetic: Encyclopedia of life: 3 records from this provider: organism-specific: Genomes On Line Database: Montastraea faveolata (Ellis and Solander, 1786) taxonomy/phylogenetic: Integrated Taxonomic Information System: WebScipio: Orbicella faveolata: organism-specific 2, Supplementary Material online). Please note: Your browser does not support the features used on Addgene's website. Orbicella Current Projects. 2014. O. faveolata is a coral species that has been studied widely under climate-driven stress and disease, and the present investigation provides new data on the genes that putatively regulate its immune system.
@article{Snelling2017IntegratingGR, title={Integrating genomic resources for a threatened Caribbean coral (Orbicella faveolata) using a genetic linkage map developed from individual larval genotypes}, author={Jacob Snelling and Katherine E Dziedzic and Sarah M. Guermond and Eli Meyer}, journal={bioRxiv}, year={2017}, pages={183467} } To address this limitation and improve genomic resources for the study of adaptation to ocean warming in corals, we’ve developed a genetic linkage map for the mountainous star coral, Orbicella faveolata. Researchers used the newly sequenced genomes of these three species to reconstruct the population histories of these corals, showing that they could recover after environmental catastrophe and expand into new habitats. Our experimental system is the Caribbean coral species Orbicella faveolata(Scleractinia: Anthozoa), which grows through asexual polyp budding and reproduces sexually once a year by broadcast spawning. In April, the NCBI Eukaryotic Genome Annotation Pipeline released new annotations in RefSeq for the following eleven organisms: Bombus terrestris (buff-tailed bumblebee) Ceratitis capitata (Mediterranean fruit fly) Athalia rosae (coleseed sawfly) Dendrobium catenatum (a monocot) Phalaenopsis equestris (a monocot) Orbicella faveolata (stony coral) Pogona vitticeps (central … 2), only one shared gene family was significantly expanded, suggesting that its large genome … Recently, several genome assemblies have been reported for the medusozoan species, including the moon jellyfish ... [Stylophora pistillata and Orbicella faveolata], hydrozoan [Hydra vulgaris], sea anemone [Exaiptasia pallida], and the Cnidaria EST database) were downloaded from NCBI and aligned with our assembled genome. Even though O. faveolata had the highest number of non-shared gene families (Fig. bioRxiv: 183467. doi: 10.1101/183467. In this study, we focused on the potential for adaptation in Orbicella faveolata, a dominant reef‐builder in the Caribbean. Stamatakis A. Corals: stressed or pessimistic? BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. S4) This observation explains the larger gene inventory in the M. capitata primary assembly. [Google Scholar] Snelling J, Dziedzic K, Guermond S, Meyer E 2017a. capitata was compared to Orbicella faveolata and Stylophora pistillata (Supplementary Fig. We conducted thermal stress experiments using corals collected from natural populations in Bocas del Toro, Panama, and used multilocus SNP genotypes to …